PAMI.partialPeriodicPattern.pyspark package

Submodules

PAMI.partialPeriodicPattern.pyspark.abstract module

PAMI.partialPeriodicPattern.pyspark.parallel3PGrowth module

class PAMI.partialPeriodicPattern.pyspark.parallel3PGrowth.Node(item, children)

Bases: object

A class to represent the node of a tree

Attributes:

itemint

item of the node

childrendict

children of the node

parentclass

parent of the node

tidslist.

list of tids

Methods:

_getTransactions()

returns the list of transactions

addChild(node)

adds the child node to the parent node

addChild(node)

adds the child node to the parent node

:param nodeclass

child node to be added

class PAMI.partialPeriodicPattern.pyspark.parallel3PGrowth.Tree

Bases: object

A class to represent the tree

Attributes:

rootclass

root of the tree

summariesdict

dictionary to store the summaries

infodict

dictionary to store the information

Methods:

add_transaction(transaction,tid)

adds the transaction to the tree

add_transaction_summ(transaction,tid_summ)

adds the transaction to the tree

get_condition_pattern(alpha)

returns the condition pattern

remove_node(node_val)

removes the node from the tree

get_ts(j)

returns the ts

getTransactions()

returns the list of transactions

merge(tree)

merges the tree

generate_patterns(prefix,glist,isResponsible = lambda x:True)

generates the patterns

add_transaction(transaction, tid)

adds the transaction to the tree

:param transactionlist

transaction to be added

:param tidint

tid of the transaction

Returns:

class returns the tree

add_transaction_summ(transaction, tid_summ)

adds the transaction to the tree

:param transactionlist

transaction to be added

:param tid_summlist

tid_summ of the transaction

Returns:

class returns the tree

generate_patterns(prefix, glist, isResponsible=<function Tree.<lambda>>)

generates the patterns

:param prefixlist

prefix of the pattern

:param glistlist.

list of items

:param isResponsiblelambda function.

lambda function to check the responsibility

Returns:

list returns the list of patterns

getTransactions()

returns the list of transactions :return: list

returns the list of transactions

get_condition_pattern(alpha)

returns the condition pattern

:param alphaint

alpha value

Returns:

list returns the list of patterns

get_ts(j)

returns the ts :param j : int

j value

Returns:

list returns the list of ts

merge(tree)

merges the tree

:param treeclass

tree to be merged

Returns:

class returns the merged tree

remove_node(node_val)

removes the node from the tree

:param node_valint

node value

PAMI.partialPeriodicPattern.pyspark.parallel3PGrowth.cond_trans(cond_pat, cond_tids)

returns the condition pattern

:param cond_patlist

condition pattern

:param cond_tidslist

condition tids

PAMI.partialPeriodicPattern.pyspark.parallel3PGrowth.getPF(self, tid_list)

PAMI.partialPeriodicPattern.pyspark.parallel3PGrowth.getps(tid_list)

returns the periodic support

:param tid_listlist.

list of tids

class PAMI.partialPeriodicPattern.pyspark.parallel3PGrowth.parallel3PGrowth(iFile, minPS, period, sep='\t')

Bases: _partialPeriodicPatterns

Description:

4PGrowth is fundamental approach to mine the partial periodic patterns in temporal database.

Reference:

Discovering Partial Periodic Itemsets in Temporal Databases,SSDBM ‘17: Proceedings of the 29th International Conference on Scientific and Statistical Database ManagementJune 2017 Article No.: 30 Pages 1–6https://doi.org/10.1145/3085504.3085535

Parameters:

• iFile – str : Name of the Input file to mine complete set of frequent pattern’s

• oFile – str : Name of the output file to store complete set of frequent patterns

• period – float: Minimum partial periodic…

• periodicSupport – float: Minimum partial periodic…

• sep – str : This variable is used to distinguish items from one another in a transaction. The default seperator is tab space. However, the users can override their default separator.

Attributes:

iFilefile

Name of the Input file or path of the input file

oFilefile

Name of the output file or path of the output file

periodicSupport: float or int or str

The user can specify periodicSupport either in count or proportion of database size. If the program detects the data type of periodicSupport is integer, then it treats periodicSupport is expressed in count. Otherwise, it will be treated as float. Example: periodicSupport=10 will be treated as integer, while periodicSupport=10.0 will be treated as float

period: float or int or str

The user can specify period either in count or proportion of database size. If the program detects the data type of period is integer, then it treats period is expressed in count. Otherwise, it will be treated as float. Example: period=10 will be treated as integer, while period=10.0 will be treated as float

sepstr

This variable is used to distinguish items from one another in a transaction. The default seperator is tab space or . However, the users can override their default separator.

memoryUSSfloat

To store the total amount of USS memory consumed by the program

memoryRSSfloat

To store the total amount of RSS memory consumed by the program

startTime:float

To record the start time of the mining process

endTime:float

To record the completion time of the mining process

Databaselist

To store the transactions of a database in list

mapSupportDictionary

To maintain the information of item and their frequency

lnoint

it represents the total no of transactions

treeclass

it represents the Tree class

finalPatternsdict

it represents to store the patterns

Methods:

mine()

Mining process will start from here

getPatterns()

Complete set of patterns will be retrieved with this function

save(oFile)

Complete set of frequent patterns will be loaded in to a output file

getPatternsAsDataFrame()

Complete set of frequent patterns will be loaded in to a dataframe

getMemoryUSS()

Total amount of USS memory consumed by the mining process will be retrieved from this function

getMemoryRSS()

Total amount of RSS memory consumed by the mining process will be retrieved from this function

getRuntime()

Total amount of runtime taken by the mining process will be retrieved from this function

creatingItemSets()

Scans the dataset or dataframes and stores in list format

partialPeriodicOneItem()

Extracts the one-frequent patterns from transactions

updateTransactions()

updates the transactions by removing the aperiodic items and sort the transactions with items by decreasing support

buildTree()

constrcuts the main tree by setting the root node as null

mine()

main program to mine the partial periodic patterns

Executing the code on terminal:

Format:

(.venv) $ python3 parallel3PGrowth.py <inputFile> <outputFile> <periodicSupport> <period>

Examples:

(.venv) $ python3 parallel3PGrowth.py sampleDB.txt patterns.txt 10.0 2.0

Sample run of the importing code:

    from PAMI.partialPeriodicPattern.basic import 4PGrowth as alg

    obj = alg.4PGrowth(iFile, periodicSupport, period)

    obj.mine()

    partialPeriodicPatterns = obj.getPatterns()

    print("Total number of partial periodic Patterns:", len(partialPeriodicPatterns))

    obj.save(oFile)

    Df = obj.getPatternInDf()

    memUSS = obj.getMemoryUSS()

    print("Total Memory in USS:", memUSS)

    memRSS = obj.getMemoryRSS()

    print("Total Memory in RSS", memRSS)

        run = obj.getRuntime()

print("Total ExecutionTime in seconds:", run)

Credits:

The complete program was written by me under the supervision of Professor Rage Uday Kiran.

Mine()

Main method where the patterns are mined by constructing tree.

cond_trans(cond_pat, cond_tids)

returns the condition pattern

:param cond_patlist

condition pattern

:param cond_tidslist

condition tids

Returns:

list returns the list of patterns

genCondTransactions(tid, basket, rank, nPartitions)

returns the conditional transactions

:param tidint

tid of the transaction

:param basketlist.

list of items

:param rankdict

dictionary to store the rank

:param nPartitionsint

number of partitions

Returns:

list returns the list of conditional transactions

getFrequentItems(data)

returns the frequent items

:param datalist

list of transactions

Returns:

list returns the list of frequent items

getFrequentItemsets(data, perFreqItems, per, minPS, PSinfo)

returns the frequent itemsets

:param datalist.

list of transactions

:param perFreqItemslist.

list of frequent items

:param perint

period

:param minPSint

minimum periodic support

:param PSinfodict

dictionary to store the information

Returns:

list returns the list of frequent itemsets

getMemoryRSS()

Total amount of RSS memory consumed by the mining process will be retrieved from this function

Returns:

returning RSS memory consumed by the mining process

Return type:

float

getMemoryUSS()

Total amount of USS memory consumed by the mining process will be retrieved from this function

Returns:

returning USS memory consumed by the mining process

Return type:

float

getPF(tid_list)

returns the periodic support

:param tid_listlist.

list of tids

Returns:

int returns the periodic support

getPartitionId(key, nPartitions)

getPatterns()

Function to send the set of frequent patterns after completion of the mining process

Returns:

returning frequent patterns

Return type:

dict

getPatternsAsDataFrame()

Storing final frequent patterns in a dataframe

Returns:

returning frequent patterns in a dataframe

Return type:

pd.DataFrame

getRuntime()

Calculating the total amount of runtime taken by the mining process

Returns:

returning total amount of runtime taken by the mining process

Return type:

float

getps(tid_list)

returns the periodic support

:param tid_listlist.

list of tids

Returns:

int returns the periodic support

numPartitions = 5

printResults()

To print all the results of execution

save(outFile)

Complete set of frequent patterns will be loaded in to a output file

Parameters:

outFile (csv file) – name of the output file

setPartitions(nums)

mine()

Main method where the patterns are mined by constructing tree.

Module contents